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Operator
Good morning. Welcome to the Waters Corporation first-quarter 2013 financial results conference call. All participants will be able to listen only until the question-and-answer session of the conference. This conference is being recorded. If you have any objections, you may disconnect at this time. I would like to introduce your host for today's call, Mr. Douglas Berthiaume, Chairman, President and Chief Executive Officer of Waters Corporation. Sir, you may begin.
Douglas Berthiaume - Chairman, President & CEO
Thank you. Well, good morning, and welcome to the Waters Corporation first-quarter financial results conference call. With me on today's call is John Ornell, Waters' Chief Financial Officer; Art Caputo, the President of the Waters Division; and Gene Cassis, Vice President of Investor Relations.
As is our normal practice, I will start with an overview of the quarter's highlights, and John will follow with details of our financial results and provide you with our outlook for the second quarter and for the full year. But before we get going, I'd like John to cover the cautionary language.
John Ornell - VP, Finance and Administration & CFO
During the course of this conference call, we will be making various forward-looking statements regarding future events or future financial performance of the Company. In particular, we will provide guidance regarding possible future income statement results of the Company this time for Q2 and full-year 2013. We caution you that all such statements are only predictions and that actual events or results may differ materially. For a detailed discussion of some of the risks and contingencies that could cause our actual performance to differ significantly from our present expectations, see our 10-K Annual Report for the fiscal year ended December 31, 2012 in Part 1 under the caption Business Risk Factors and the cautionary language included in this morning's press release and 8-K.
We further caution you that the Company does not obligate or commit itself by providing this guidance to update predictions. We do not plan to update predictions regarding possible future income statement results, except during our regularly scheduled quarterly earnings release conference calls and webcasts. The next earnings release call and webcast is currently planned for July 2013.
During this call, we will be referring to certain non-GAAP financial measures. A reconciliation of the non-GAAP financial measures to the most directly comparable GAAP measures is attached to the Company's earnings release issued this morning. In our discussions of the results of operations, we may refer to pro forma results, which exclude the impact of items such as those outlined in our schedule entitled Reconciliation of Net Income Per Diluted Share included in this morning's press release.
Douglas Berthiaume - Chairman, President & CEO
Thank you, John. 2013 has started off pretty much as we had anticipated. Our demand for new instrument system has improved nicely from the trends we saw throughout last year and has returned to organic growth rates with strong free cash generation that are more in line with our historical performance. Though our reported sales and earnings per share were lower than we had forecast, the shortfall was entirely due to currency translation dynamics, primarily the significant weakening we have seen in the Japanese yen.
Looking at the first quarter, our constant currency sales grew about 5%. Our adjusted earnings per share were up 7% and we generated strong free cash flow. John will review for you our financial performance in more detail momentarily.
For the Waters Division, our pharmaceutical end markets grew organically at a mid-single-digit rate with strong sales in India and China compensating for slower capital releases among large multinationals. Global government and academic demand accelerated to a high single digit rate based largely on successful mass spectrometry technology-driven lines. Outside of life science markets, industrial chemical and applied markets grew more moderately in the quarter.
Geographically, the highlights in the quarter include a return to strong growth in India and the continued robustness of our business in China. The strength in China was broad-based across the applications we address, and looks to be sustainable in upcoming quarters. They are also expecting the strength in India to continue as the local currency has stabilized and as production volumes for generic drugs ramp up and as CRO spending increases.
Waters Division constant currency sales in Japan were modestly down in the quarter with nearly all customer categories exhibiting somewhat lackluster demand. This weak demand compounded the adverse effects of the weakened currency. We remain encouraged that sales growth will improve in Japan during the second half of 2013 as governmental stimulus programs kick in and as exporting manufacturing companies start investing due to potentially stronger province as a result of the weaker yen.
In the US and staying on the Waters Division performance, sales were up mid-single digits. We saw our strongest growth in pharmaceutical and chemical analysis segments while our government and academic spending were somewhat softer. The strength in pharma spending was largely from specialty clinical diagnostics and CRO customers. Spending from some of our larger pharmaceutical accounts shifted into the second quarter due to delays in capital budgets.
In general, our developing markets in Latin America performed pretty well in the first quarter in comparison to mixed results throughout 2012. Our European business in constant currency for the Waters Division was about flat in the first quarter, essentially in line with our expectations.
Looking at customer groupings, European government and academic spending was robust in the quarter while pharmaceutical and chemical analysis both saw a modest decline. The academic strength was in part due to significant mass spectrometry placements of proteomics and metabolomics applications.
Our TA Division started off 2013 with a solid mid-single digit constant currency sales growth quarter. Growth was largely driven by new technology products with high temperature instruments beginning to have a more meaningful impact in the division's overall sales performance. These high temperature systems, instruments that are used to characterize metals and ceramics, are sourced from businesses that TA acquired during the past couple of years and will continue to expand TA's application reach for years to come. Geographically, growth for TA was largely balanced across major markets.
Now I will discuss some productline dynamics that we saw in the quarter. Our recurring revenues, the combination of service and chromatography consumables, only grew modestly in the first quarter as both our chemistry and service businesses were adversely affected by roughly two fewer selling days in the quarter and by, in the case of our service revenues, a tough comparison to a double-digit growth in the first quarter 2012.
Chemistry growth was a little weaker than we had anticipated even in light of the fewer selling days. However, ordering trends for columns and other chemical reagents have picked up early in the second quarter, and we anticipate that growth rates will normalize towards historical mid-single digit levels as we move through this year.
ACQUITY columns continue to account for an increasing proportion of our overall column business, and this trend is consistent with a steady uptick in UPLC adoption rates.
Looking at our Waters Division instrument system sales, sales growth was particularly strong for UPLC mass spec systems. All our major mass spec technology platforms, including QTof, tandem quadrupole and single quadrupole devices, grew at double-digit rates with strong uptake in pharmaceutical R&D applications. This trend is very encouraging as we can begin to see the positive impact that our new UNIFI operating system is having in driving advanced system offerings and enhancing our competitive position in the marketplace.
On the chromatography front, we saw the strongest growth in orders for ACQUITY H-Class and UPC2 technology systems. H-Class benefited from strong uptake when sold along with single and tandem quadrupole detection technology while UPC2 adoption rates continued to steadily improve across a wide array of application.
In March, at the Pittsburgh conference, customers were very excited to see a new advanced polymer characterization system called ACQUITY APC that we introduced at that venue. The ACQUITY APC system couples new size exclusion ACQUITY column chemistry with a tailored ACQUITY UPLC system that includes a new high sensitivity refractive index detector. Developed in collaboration with researchers at Dow Chemical, this new system represents a long-awaited quantum step in analytical capability for researchers developing advanced polymer-based products. We expect to see sales growth impact from this system as volumes ramp up during the second half of the year.
On the HPLC front, we saw consistent demand for our Alliance system. Alliance continues to be the workhorse system for generic drug quality control applications and its consistent performance over many years has created a loyal customer base, a base fairly unwilling to change their purchase pattern.
In that light, we have recently updated our Alliance system to ensure our ability to continue to manufacture and support this system for a number of years. The updated Alliance system offers performance that allows for seamless method transfer from earlier Alliance systems while providing updated electronics and improved industrial design.
So what do I think is in store for us going forward? The simple answer is largely more of the same. In that, I mean stable top-line growth, industry-leading profitability and cash flow and a conservative capital allocation strategy.
On the product front, expect us to continue to leverage the convergence of UPLC and mass spec technologies to create advanced UNIFI-based application tailored systems. You will see examples of this at ASMS later this quarter, as well as significant new MS innovations.
On the M&A front, we will continue to see smaller complementary technology opportunities that fit our profitability and growth characteristics. It is likely that we will see more activity on this front from our TA Instruments division over the next few quarters as more assets appear accessible.
I'm confident that 2013 will be a successful year for Waters and that we will return to top-line growth that is closer to our historical average rate, significantly better than what we saw last year during an industrywide slowdown.
While we are not seeing economic conditions that suggest a robust recovery in the near term, we sense stability in the market. This market stability in combination with the high degree of confidence that I have in our competitive position and in our technologically-focused business strategy gives me confidence that we can perform well this year. Now here is John for a review of our financials and an update on our outlook.
John Ornell - VP, Finance and Administration & CFO
Thank you, Doug and good morning. First-quarter sales grew by 5% before currency translation. Currency translation reduced sales growth by 3%, resulting in 2% overall sales growth. Non-GAAP earnings per fully diluted share were up 7% to $1.07 this quarter compared to earnings of $1.00 last year.
On a GAAP basis, our earnings were $1.39 this quarter versus $0.98 last year, and a reconciliation of our GAAP to non-GAAP earnings is attached to our press release issued this morning. Our GAAP results this quarter contain a one-time income tax benefit from an update of our reserves based on recent significant progress made towards closure in ongoing income tax examinations.
As I just mentioned, before foreign currency translation, sales were up about 5%. Looking at this growth geographically, and again, before foreign exchange effects, sales within the United States were up 6%; Europe was up 1%; Japan was down 2%; and sales in Asia outside of Japan were up 5%. ROW sales growth in the quarter was strong.
On the product front and in constant currency within the Waters Division, instrument system sales increased by 8% and recurring revenues increased by 3% this quarter. Within our TA Instruments division, total sales increased by 6% versus prior year.
Now I would like to comment on our Q1 non-GAAP financial performance versus prior year. Gross margin performance came in about as expected at 59.4%, down modestly from Q1 last year. As described in our prior guidance, we expect a modest decline in gross margin percentage across the year versus prior year as a result of a weaker currency translation environment and from additional software amortization from the release of our UNIFI products.
Additionally this quarter, growth accelerated for our QTof-based mass spectrometry products, resulting in a mix shift that slightly reduced gross margin percentage and added toward the (inaudible) sales growth. SG&A expenses were up 1% as a result of currency translation and continued tight spending controls. R&D expenses increased by 8% this quarter.
On the tax front, our effective operating tax rate for Q1 came in at 12.6%, which contributed about $0.015 to earnings benefit to our results this quarter versus our prior expectation. Our tax rate for Q1 is lower than our anticipated full-year tax rate because it includes the R&D tax credit for 2012 that was reinstated in early 2013. For the full year, we expect our tax rate to be between 15% and 15.5%.
In the quarter, net interest expense was $6 million and share count came in at 87.2 million shares, 3 million lower than Q1 last year as a result of our continued share repurchase programs.
On the balance sheet, cash and short-term investments totaled $1.590 billion and debt totaled $1.233 billion, bringing us to a net cash position of about $357 million.
As for Q1 share repurchases, we bought slightly over a million shares of our common stock for $95 million. This leaves $548 million remaining on our most recently authorized share repurchase program.
We define free cash flow as cash from operations, less capital expenditures, plus any non-cash tax benefit from stock-based compensation accounting and excluding unusual nonrecurring items. For Q1, free cash flow came in at $113 million after funding $18 million of CapEx. Excluded from this CapEx amount is $12 million of spend associated with our new Manchester, UK mass spectrometry facility. We expect this facility to be ready for occupancy in 2014.
Accounts receivable days sales outstanding stood at 80 days this quarter, up three days from Q1 last year and in the quarter, as is typical early in the year, inventories increased by $7 million.
Now, thinking about the remainder of 2013, we had slightly stronger organic sales growth to start the year and current business conditions look to support a continuation of this mid-single digit growth trend. On the currency translation front, there has been a general weakening of major foreign currencies versus the dollar with the Japanese yen leading the way with more than 10% depreciation since the start of the year. Updating our guidance for current translation rates now results in a 2% headwind from currency translation for the full year.
Moving down the P&L, gross margins are expected to be about 59.5%, a modest decline due largely to currency translation and software amortization dynamics I discussed earlier. Operating expenses are expected to be up around 3% from 2012. Net interest expense is expected to be approximately $24 million and we expect our full-year operating tax rate to be between 15% and 15.5%. Our full-year average diluted share count is likely to be around 85.5 million shares outstanding.
Rolling all of this together, non-GAAP earnings per fully diluted share are expected to be in the range of $5.15 to $5.25. This is $0.15 below our guidance from January and reflects the adverse impact of foreign currency translation at today's exchange rates.
As we think about our expectations for the second quarter of 2013, we expect organic sales growth to continue to be in the mid-single digits. Currency at today's rates would reduce sales by about 2% resulting in reported sales growth of about 3% to 4%. This brings non-GAAP earnings per fully diluted share to be in the range of $1.18 to $1.23.
Douglas Berthiaume - Chairman, President & CEO
Thank you, John. I think, operator, at this point, we can open it up for Q&A.
Operator
(Operator Instructions). Ross Muken, ISI Group.
Ross Muken - Analyst
It would seem like one of the stories for the quarter was sort of a recovering in instrument growth, and I know you had an easing comp there, but it seemed to be even better than most of us were looking for. And so if you sort of had to tease out -- as obviously it seems like more broadly CapEx demand is sort of soft, if you need to tease out sort of market growth, new instruments, maybe the benefit from India, sort of the different components of what sort of drove you better certainly than the market, but even sort of better than forecast. How would you sort of lay that out amongst the different pieces?
Douglas Berthiaume - Chairman, President & CEO
Well, it is, again, hard to totally characterize what is going in the market for one quarter, but I think the significant dynamics for us was a quite strong mass spec business pretty much all over. So we saw good, strong results across every mass spec platform -- the tandems, the high-end SYNAPT QTof line and the single quads.
We also saw a return to growth in India. Now it has been a while coming, but we finally saw a return to significant growth in India, and we have seen a continuation of very strong business conditions in China. And our results there are probably stronger than most. The US held up pretty well in the quarter and Western Europe was soft, but not softer than we had anticipated. I think that all rolled up into a stronger capital position than certainly we've seen through most of 2012.
Ross Muken - Analyst
And on the margin line, it seems like all of the sort of issue you've had on pullthrough is sort of currency-related. I know it is hard to react to short-term changes, but it seems like, given the commentary particularly out of Japan, we are going to be in for a period of a weak yen now for a while. Is there anything you can do to sort of mitigate that? I know you don't have a lot of cost base in that region. I'm not suggesting hedging, but on a medium-term basis, do you think about sort of shifting the region or is there anything you can do to basically offset some of that or we'll just have to live with the incrementals for the year as long as the yen is weak?
Douglas Berthiaume - Chairman, President & CEO
Well, our forecast anticipates that we live with it for the year. Within Japan, it should be noted our Japanese business is a very profitable business. So even at JPY100, this business continues to operate very profitably for us, just not as profitable as it was, of course, at an JPY80. And we don't do any manufacturing in Japan, and we don't intend to.
So all of our revenues in Japan, except for the locally-sourced service and administrative costs, are exposed to the yen. That is why the flow-through to our bottom line is so significant coming out of Japan, whereas, in Europe, we do a lot of manufacturing in Manchester and in Ireland. So we mitigate the -- we are more balanced in terms of our costs and revenues in Europe.
So what we could see is, if this stronger organic revenue continues for the year, it is conceivable that that would be higher than our current forecast and that might lead to a mitigation of the yen situation, but we have no intention of now locking in the yen at JPY100. We are much better over the long term managing in this currency environment, and we will modify our long-term budget and strategic plans, but within a year, it is very difficult to offset this kind of currency move.
Ross Muken - Analyst
Great. Thanks, Doug.
Operator
Daniel Brennan, Morgan Stanley.
Daniel Brennan - Analyst
Thanks for taking the call. Just wanted to start with some customer kind of deeper dive, starting with large pharma, Doug and John. Maybe can you comment on how much of a drag the slower release of budgets in the first quarter was on your business and kind of what did large pharma grow in the quarter and how are you thinking about full-year growth from that customer base?
Douglas Berthiaume - Chairman, President & CEO
Yes, just thinking qualitative terms, Dan, it is a combination of what we think of slow budgets and maybe a little calendar effect. There was an unfortunate timing of Good Friday and we clearly saw some large orders from big pharma that we thought would be late in the quarter that we've subsequently seen flip into the second quarter of the year.
So we have specific evidence of that, and we have what we think of as being a somewhat encouraging qualitative feedback from many of our large pharma customers concerning their plans. And in fact, early on, we've seen some of that materialize.
So there is some evidence of it. We are not taking it all to the bank. But we think the combination of those dynamics probably means that the first quarter, maybe the rest of the year is a bit stronger in that environment than we saw in the first quarter. John, do you want to comment at all about large pharma?
John Ornell - VP, Finance and Administration & CFO
Yes, I would just say that generally speaking pharma all in grew mid-single digits. It did well and that is in spite of the drag that we're talking about with large pharma. So I think most of that, as Doug said, is really just a lag in the release. As we said, we had a very good start to the second quarter with that group of customers, so it doesn't appear to be a full-year dynamic.
Daniel Brennan - Analyst
Okay, great. And then maybe just kind of sticking with the customers, could you kind of update us on how you are thinking about academic, government, industrial kind of growth throughout the year? Certainly I get that your academic and government you said grew high single this quarter and industrial sounds like it kind of maybe grew modestly. How are you thinking about the remainder of the year for those two customer bases? Thanks.
John Ornell - VP, Finance and Administration & CFO
I think on the government academic side, the good news is that we have a pretty diverse worldwide clientele of customers. The US wasn't certainly as robust as our customer base in Asia, for example. So all in, we had a really good year, a good start to the year with government, academic, significant shipment of some high-end mass spectrometry products within Europe. Some of those customers as well helped.
So I would say we are certainly above where we thought we would be through one quarter. Maybe instead of flat for this group of customers, there is a modest amount of growth as we make our way through the year. But we are certainly off to a good start and better than we would have said as we entered the year.
On the industrial side, I would say that we are not meaningfully off of our original expectation. That still grew kind of at 3%, 4%, so it wasn't as low as you might think. We are pretty optimistic as we look at the product offerings that we have -- the new APC, the TA Instruments offerings that will extract our share of business from that group of customers as well. So I wouldn't say we are concerned about even the industrial chemical side of the business at this point.
Daniel Brennan - Analyst
Great. Thank you.
Operator
Paul Knight, CLSA.
Paul Knight - Analyst
Hi, Doug. It is the most bullish you've been on having TA move on acquisitions. What is creating that level of I guess heightened interest on your part?
Douglas Berthiaume - Chairman, President & CEO
Well, a lot of it is we keep looking hard there. We've got a confident, aggressive management team and they kind of fit our mold of being in our sweet spot of revenues that range from $5 million to $20 million, businesses that can easily fit within the infrastructure of the TA Division and probably a little more interest at this stage in the year on a number of these fronts than we've seen. So it may be making a little more progress. So I could be embarrassed and by the end of the year, we might not have secured the fronts that I think we are working well on. Our forecast, of course, doesn't include any of this, but I feel better at this point in the year about making progress there than probably I have traditionally, Paul.
Paul Knight - Analyst
Yes, and then lastly, I know NIH is a small part, but could you tell how that market was in the quarter and your projection of it?
Douglas Berthiaume - Chairman, President & CEO
Well, I think probably, like everybody, we think sequestration hurt a bit. The US market in this area wasn't strong for us. But the timing of NIH type of procurement can also be a little hard to read. So it wasn't good, and we are anticipating that it is going to be on the soft side for the rest of the year.
Paul Knight - Analyst
Yes, okay. Thank you.
Operator
Doug Schenkel, Cowen & Company.
Doug Schenkel - Analyst
My first question is does your Q2 guidance assume that you capture the revenue you missed out on in Q1 due to the delay in the release of capital budgets? And has a portion of that, and maybe even a significant portion of that amount already been recorded?
Douglas Berthiaume - Chairman, President & CEO
Well, I think it is fair to say that we are optimistic that the second-quarter return some of those revenues that we anticipated in the first quarter. It would also be fair to say that our guidance tempers to some extent and doesn't necessarily include the fact that that will stick for the full quarter. We like to be a little conservative on this front because it is not impossible that we see an end-of-the-quarter flip from the second quarter into the third quarter also. So we try to draw a midline between those expectations. I think it means that we are more secure in this forecast, but it doesn't mean that we've necessarily included a large batch of those orders. I think of it as more insurance than it is largely reflected in our forecast.
Doug Schenkel - Analyst
And if they were already booked, it would be more than insurance. Is that a fair observation?
Douglas Berthiaume - Chairman, President & CEO
Yes, but, again, there is no guarantee that some of the things that we have anticipated at the end of the quarter couldn't flip into the next quarter. So we are feeling good, but we are not going to totally take it to the bank yet.
Doug Schenkel - Analyst
Okay. And one area of clear investor focus recently has been on the pacing of the quarter, specifically what happened in March based on some commentary from other companies. Anything notable or surprising? It doesn't seem like that was the case, but just to be clear, would you guys talk about whether you saw anything abnormal as a result of the sequester in March and more broadly in some of your cyclical end markets?
Douglas Berthiaume - Chairman, President & CEO
Doug, I would say the only thing that the end of the quarter saw was the timing of Good Friday in our more religious areas of the world. It fell on the last day of the quarter, and we have some reasonably good evidence that that probably combined with capital releases in large pharma swung some timing of orders into the early part of the second quarter.
I'd say the only other quarterly dynamic that we are seeing reverse is this whole issue on the consumables side. We've seen a curious dynamic on the consumables side being a slow start to the year. This isn't the first time, but this was a more unusual dynamic where we saw a very soft consumables business, frankly throughout the first quarter, and that seems to have turned very rapidly in the second quarter, and that may be uncertainty on the part of some of these large customers. It could be inventory management. We think that that's a one-time quarterly dynamic and have some pretty good evidence that it is already starting to turn. So that's the only, I'd say, calendar type of dynamic, as well as one to two fewer selling days in the first quarter on the consumables part.
Doug Schenkel - Analyst
Okay, and last question, really a good quarter from an operating standpoint, especially when you adjust for FX. That said, SG&A grew I believe less than 1% year-over-year on about 5% constant currency revenue growth. And this was against a pretty favorable comp at the SG&A line and follows three quarters where SG&A spend declined about 3% to 4% relative to the previous year. How sustainable is this? I assume you get some natural hedge as a result of FX, but beyond that can you maintain SG&A at these levels moving forward?
John Ornell - VP, Finance and Administration & CFO
Yes, I think, from a model perspective, we've got about a 3% growth all in for the remainder of the year. And there are certain areas of the world that are going to require some level of investment as sales growth is in the double digits in those regions. As we've always said, we hold back as we start the year in making those types of investments to be sure that we are comfortable with the trajectory that we see. So I think there will be a modest lift in SG&A as we make our way through the next few quarters. There could be -- there's a little flexibility in that, but I would say we've been somewhat stingy in releasing some amount of expense in some of these regions where it's needed and you're going to see that creep up a little bit as we make our way through the year.
Doug Schenkel - Analyst
Okay. Thanks again, guys.
Operator
Vamil Divan, Credit Suisse.
Vamil Divan - Analyst
Good morning. Thanks for taking the questions. So one, just maybe high-level one. Obviously, we are seeing some more consolidation taking place in the sector. You guys aren't small, but maybe smaller than some of your peers. Just any sort of updated views you might have there, especially as you think about trying to expand into newer areas, such as more than (multiple speakers).
Douglas Berthiaume - Chairman, President & CEO
I'm sorry, could you -- you faded at the end of that question. Could you repeat it please?
Vamil Divan - Analyst
Yes, sorry. Just in terms of some of the consolidation that is taking place, if you have any updated views regarding just your size relative to some of your peers, especially as you think about moving to some of the more clinical end markets with some of your technologies. How do you see your position versus some of these bigger peers now?
Douglas Berthiaume - Chairman, President & CEO
Sure, it's probably a timely question. I think clearly you can look at maybe segregating business strategies in the life science tools area broadly into two categories. One group of companies who drive their strategy believing that they can get economies of scale and drive their business through acquiring like businesses and driving more business through their distribution organization versus companies kind of what I think clearly Waters is that focus on the needs of a smaller set of customers with a smaller set of technologies and try to optimize that to benefit the customers and focus kind of exclusively in those areas of their expertise. Obviously, not a perfect cut between those, but I think you can characterize companies as falling in either one of those sets.
I think the companies that have focused on the former on the distribution side are characterized by lower growth rates, lower growth in organic earnings and lower return on invested capitals than companies like us that have focused on the specific needs of their customer set, hone their business, manage their capital spending to a finer degree.
Waters has competed over the 30 years that I've been involved in the industry. Most of the time competing with larger companies that have multitechnology arms and arms that have competed with one another for capital. And we've come out pretty well on that score.
So I don't think that there is a whole lot of evidence that suggests that there are unusual returns to scale in this industry. Granted, you have to be competing in a marketplace that is big enough to support your organization, but the chromatography and the mass spec markets are amongst the most sizable in our industry and offer continuing opportunities for us to provide our shareholders with above-average returns. I guess that's how I'd answer it.
Vamil Divan - Analyst
All right, thanks. That's helpful to hear. And then just one other one, I know it's a little bit early, but in terms of ASMS coming up in a few weeks now, any kind of insights you can provide regarding what we should expect there, anything that you're looking at as a big sort of pivotal meeting or is it more incremental advances?
Douglas Berthiaume - Chairman, President & CEO
I think, at this point, we are not prepared to announce at ASMS, but we would encourage you to go and I think it will be a rewarding show.
Vamil Divan - Analyst
Okay, all right. I'll get over there. Thank you.
Operator
Amit Bhalla, Citi.
Amit Bhalla - Analyst
On consumables, when you talked about the potential impacts that you saw in the quarter, you didn't discuss competition. Anything on the competitive front that could be impacted in the consumables side?
Douglas Berthiaume - Chairman, President & CEO
We don't think so. It is a little bit of a head scratcher and in that particular area, there is -- it is highly unlikely that a new product offering moves things very fast. And we certainly have not seen that. We think it is totally a combination of calendar dynamics and unusual slowness in customer activity early on.
In places like China, you could see unusual quarterly dynamics where they place their year-long chemistry orders in a lumpy pattern, and we certainly saw some of that during this quarter. So I don't think there is much of a competitive dynamic here. And I think the short amount of evidence that we've seen so far in the second quarter supports that assertion.
Amit Bhalla - Analyst
Okay. And then on China, robust performance overall. Can you give a little more detail by the end markets in terms of performance?
Douglas Berthiaume - Chairman, President & CEO
I think the very encouraging thing about China is that it is broad-based. It is across the traditional life science applications, as well as food quality, food safety and industrial applications. So boy, I'd say, if anything, we see the underlying dynamics in China strengthening a little bit rather than softening And it is broad-based.
Amit Bhalla - Analyst
And if I can just sneak a quick one in at the end. You mentioned in the prepared comments about Alliance and the stickiness there. As you continue to manufacture more Alliance system and demands there, what is the impact on pricing and gross margin for the business? Thanks.
Douglas Berthiaume - Chairman, President & CEO
Nothing I said should lead you to believe that there is a significant pricing dynamic or gross margin dynamic. The new Alliance is largely an update of the old Alliance; doesn't really significantly change the pricing of the margin dynamics.
Amit Bhalla - Analyst
Thanks a lot, Doug.
Operator
Jon Groberg, Macquarie.
Jon Groberg - Analyst
Thanks. One, I hope everybody is okay up there in Boston after last week and everyone at Waters. Doug, if I look at, just to make it clear, what are you assuming for your exchange rates now for the rest of the year? I think initially you had the yen at 86.
John Ornell - VP, Finance and Administration & CFO
Yes, we are assuming the current rates of 99 now for the yen, and the others are just about where they were. The big difference being the fact that obviously the yen has depreciated meaningfully across the quarter.
Jon Groberg - Analyst
So John, if I look at that, it looks like pretty much, if I do that math given where you were and where it went to, it looks like pretty much all the EPS revision is driven by the new yen expectations. So you're basically not assuming better organic growth that offsets any of that.
John Ornell - VP, Finance and Administration & CFO
That's correct. I'd say, right now, we are looking at a mid-single digit growth expectation comparable with what we said in Q1. Yes, we did come in a little bit better to start the year. That's encouraging. We are talking about new products and opportunities that maybe makes that a little bit better, but I think it is just a little too early in the year to think about moving that number up at this point.
Jon Groberg - Analyst
Okay, I just wanted to be clear. And then on the R&D line, was there -- that grew quite a bit, obviously, as a percent of sales and year-over-year. Is there -- is that just in anticipation as you were mentioning around ASMS, or is there anything in particular going on there?
John Ornell - VP, Finance and Administration & CFO
Yes, (multiple speakers) timing. We have a fair number of project-related expenses on that line, so a fixed base of labor. They are sizable, but the project spend can move that number up and down a few points a quarter. And in this quarter, we had a few new mass spec products that required some help from beta units. So the project expense timing of that was a little bit skewed towards the first quarter versus what you will see for the rest of the year.
John Ornell - VP, Finance and Administration & CFO
That growth rate moderates over the year, Jon.
Jon Groberg - Analyst
Right, so your comment of the 3% was a total OpEx number, right?
John Ornell - VP, Finance and Administration & CFO
Correct.
Jon Groberg - Analyst
Okay. And then, Doug, this is for you. If you look over the last couple years, your net cash position has been building up quite a bit. Is there any reason that you can't be more aggressive there, do a larger buyback, get more in that debt position? I know you mentioned some smaller acquisitions in TA, but maybe what is kind of the strategy there? Thanks.
Douglas Berthiaume - Chairman, President & CEO
Well, the net cash position is largely driven by the offshore dynamics of our profitability. And so, like a lot of technology companies, if we remit those earnings from offshore, then we are faced with a large US tax burden. So our tendency is to keep those funds invested offshore and to the extent that we don't generate enough local cash to support the buyback or our capital acquisitions, then the debt markets are more than adequate to support those needs. So it is a balance between those two that you see reflected in our balance sheet.
Jon Groberg - Analyst
In the US, are you kind of bouncing up against some of your covenants in terms of the US cash flow that you are generating in order to be able to borrow more or to do more of a buyback?
John Ornell - VP, Finance and Administration & CFO
Not at this point. We are careful to ensure that the pace of the buyback that we do year-by-year affords us enough headroom as the business grows to be able to continue that type of trajectory of share repurchase. So thinking that today we might go out and do another $0.5 billion buyback one time and push up against the ceiling isn't something we want to do. The message we want to send is that we have a very consistent program that allows us the opportunity to spend $300 million, $350 million on a consistent basis each year and not bump up against those covenants. And you will probably see us expand our revolver as the year goes on to ensure that we maintain headroom in that lending facility.
Jon Groberg - Analyst
Okay. Thanks.
Operator
Tim Evans, Wells Fargo Securities.
Tim Evans - Analyst
Thanks. I guess one of the themes in 2012 was some pressure at the high end of the mass spec market. I'm certainly not getting that sense today. So has that eased? And if so, why?
Douglas Berthiaume - Chairman, President & CEO
We've definitely seen an improvement in our business at the high end of the mass spec marketplace. I think -- and we've seen it significantly in proteomics and metabolomics applications. It is coincidental with some technological improvements that we made in a number of those productlines, which we have anecdotal support from our customer base concerning the benefit of those changes. So I think it is a little bit better marketplace, a better product offering that we've seen. It also comes together with the fact that the entire mass spec productline is operating very strongly right now. So it is noticeable. I do think it is a point. We saw a beginning of this in the fourth quarter and a strong continuation as we go into 2013.
Tim Evans - Analyst
Great. And then just one other quick one real quick. You talked about your expectation for stability and a continuation of the positive trends that you've seen in Q1 from the organic growth side. That seems a little bit different than some of the macro data points -- we are getting some weaker PMI numbers in even this morning. When you talk about the stability, what are you looking at? Are you looking at orders in hand or are you looking at macro variables?
John Ornell - VP, Finance and Administration & CFO
We are looking at a combination of all those, Tim. We are looking at a rolling average of our run rates in areas that have been indicative of the future. We are looking at our major geographies and looking at kind of what we call the drop sheets of customers that have asked for quotes, asked for early order indications, indicated interest in our new technologies. And in our biggest geographies, with the US operating a little bit on the positive side, China operating on the very positive side, India returning off a period of very low growth with the opportunity to see pent-up replacement demand, I think traditionally the overall GDP numbers in our areas don't correlate terribly well with Waters' individual growth dynamics. Obviously, we are not immune from economic activity as we saw in 2009, but if you cast out those outliers, our individual markets are a better indicator than the overall GDP numbers. And we continue to be reasonably optimistic about what we are seeing in our individual markets.
Tim Evans - Analyst
Great. Thank you very much.
Operator
Isaac Ro, Goldman Sachs.
Isaac Ro - Analyst
Thanks for taking the question. First off, on ex-US markets, wondering if you could maybe elaborate on Japan and India. In Japan, just wondering how you're looking at the impact of potential stimulus opportunities there as we move into the second and third quarters. And then in India, can you maybe quantify the magnitude of improvement that you saw this quarter, how much of it was easy comps versus just an underlying improvement in the demand picture?
Douglas Berthiaume - Chairman, President & CEO
I think the India question, you can't ignore the fact that we didn't have a great year or quarter last year. So we did a little bit better than two years ago, if you want to put it that way, but I wouldn't say that you're on a robust growth dynamic compared to two years ago. But it is still good off a baseline. We still think there is some pent-up replacement demand in India, and we are encouraged about what those customers are saying given the current state of the rupee and given the current state of regulatory hurdles in India. We think that this kind of high teens kind of growth rate level for India looks sustainable. It in no way kind of is a quantum leap off two years ago, but it is good to see growth in that environment.
The Japanese, we agree with you that we think stimulus spending can improve the situation in Japan as we go through the year. The stimulus amounts are very clearly aimed partly at customers in our segment. So we think our forecast accounts for a little of that, but we are not going to take it all to the bank until we start seeing those orders begin to roll in.
Isaac Ro - Analyst
That's very helpful. Thank you. And then just on TA, one more question there regarding your comments on M&A opportunities. You said that there are more assets available. I'm just wondering why that's the case now. I would think that competition is higher just given the low cost of debt and the lack of growth that a lot of companies are seeing. So just wondering if you think it is an issue where you are more willing to deploy capital there given your cash generation and your balance sheet. Or is it a situation where you are seeing more willing sellers for some company-specific reasons?
Douglas Berthiaume - Chairman, President & CEO
I think it is probably more that just we've been so active in that area and in our world, there are more opportunities, more niche opportunities in that physical properties segment of the marketplace, whereas, in the chromatography mass spec arena, they are much larger companies who are more established. And I think in some of these cases, you are looking at companies that are run by older people, older management teams who are ready to perhaps move along. It is not a homogenous set of companies that we are looking at. There are different dynamics driving a number of them. So it is hard to characterize them with a broad brush.
Isaac Ro - Analyst
Fair enough. Thank you very much.
Operator
Dan Leonard, Leerink Swann.
Dan Leonard - Analyst
Thank you. I was just hoping to get a better idea of how the weaker yen impacts profitability, and my question is a two-part one. You mentioned that Japan is still very profitable at $100 yen. I'm wondering if it is still above the corporate average of JPY100 and if that is the case, when does it fall below? Is it JPY105, is it JPY110? And then secondly, is it correct to assume that the lion's share of your year-over-year gross margin decline in the quarter, the lion's share of that was yes as opposed to the software amortization? Thank you.
Douglas Berthiaume - Chairman, President & CEO
John, do you want to start on that?
John Ornell - VP, Finance and Administration & CFO
Sure. The Japanese business, even back at JPY115, was a very profitable business and not a meaningful drag even at that level on the business. So it is the change year-over-year that gets our attention. But when you look at the absolute dollars of profit coming from that business at a JPY100 translation, it is still a very profitable business.
Douglas Berthiaume - Chairman, President & CEO
It probably has to get north of JPY115 to start dropping it below corporate average.
John Ornell - VP, Finance and Administration & CFO
Yes, exactly.
Dan Leonard - Analyst
Okay, and then the second part of my question (multiple speakers).
John Ornell - VP, Finance and Administration & CFO
Gross margin, it is probably a 50-50 split. It is a meaningful amount of amortization. We're ramping up sales, particularly early in the year, on those products, so you're having a bit more of an impact to start the year than finish the year. The yen will be more of an impact on margins as we make our way into the second quarter through the fourth quarter as the yen started closer to 90. It ended up closer to 100 in the first quarter. So you didn't have a full-quarter impact, so that mix will change a little bit as UNIFI sales ramp up as time goes on and as we feel the full impact of the yen on margins Qs 2 through 4.
Dan Leonard - Analyst
Okay. Thank you very much.
Operator
Peter Lawson, Mizuho Securities.
Peter Lawson - Analyst
Doug, just quickly, on the chemistry and recurring business, what gives you the confidence that kind of gets back to the normalized growth level for the rest of the year?
Douglas Berthiaume - Chairman, President & CEO
Well, partly, Peter, we've already seen the dynamic change early on in the second quarter. We've also looked at the order patterns region-by-region and have become more confident that some of the lumpy order patterns for large chemistry orders in places like China where you don't have the kind of traditional onesie type of orders. You see much more bulk ordering in those territories and we saw an unusual dropoff and then a quick pickup. And we've looked at the competitive offerings. We've looked at the other dynamics that could change it. And we don't see -- we are not anticipating robust sales, but we are pretty confident of a return to the mid-single digit chemistry dynamics in even a depressed year we think we can return to.
Peter Lawson - Analyst
In the software amortization, why is that an issue now? Why wasn't that anticipated at the beginning of the year? Is it kind of (multiple speakers)?
John Ornell - VP, Finance and Administration & CFO
No, no, it was anticipated. The deltas I'm talking about weren't deltas from the guide; it was from last year. So we did anticipate that and talked about it coming into play right at the start of the year.
Peter Lawson - Analyst
Got you. Thank you. That really helped clarify things. Thank you.
Operator
Derik De Bruin, Bank of America-Merrill Lynch.
Derik De Bruin - Analyst
Just two real quick questions. I know you don't have a ton of overlap in terms of your end-market customers with Shimadzu and Hitachi, but have you seen any change in the competitive dynamic with your Japanese competitors now that the yen has gotten a little bit more in their favor?
Douglas Berthiaume - Chairman, President & CEO
I don't think, in a broad way, we've seen much difference, Derik. The Japanese haven't changed their spots from when the yen was 120 to when it was 90. They have always tended to be low-priced competitors. And we haven't seen -- I think they may be taking this opportunity to enhance their own P&Ls rather than think that a further low-price strategy is going to do much for them.
Derik De Bruin - Analyst
That's consistent with what we've heard from some other companies. And just one other follow-up, I guess on the applied markets, you mentioned that growth, it was a little bit more modest. Can you elaborate a little bit on this? Was this in food, was this -- I am just curious in terms of what you are seeing there. That's been such a big driver.
Douglas Berthiaume - Chairman, President & CEO
No, food actually was reasonably good. It was environmental applications and some of the industrial chemical applications were probably more on the soft side.
Derik De Bruin - Analyst
Okay, so you're including industrial chemical in that one. Okay, great. Thanks.
Operator
Tycho Peterson, JPMorgan.
Tycho Peterson - Analyst
Thanks for taking the question. Just a couple quick ones here. As we think about kind of the back half of the year, are you able to just give us a sense as to how we should think about some of the new products tracking, in particular the advanced polymer chromatography that you talked about at Pittcon earlier this year?
John Ornell - VP, Finance and Administration & CFO
That product is likely to be a rather modest sales product across the second half of the year. It is a rather limited set of customers. There will be meaningful interest from the Dows, the Duponts, the 3Ms and the like, but it's not going to add a point of growth as we look at Q3 and Q4. As time goes on and the product ramps up, maybe we get a little more juice from that, but it just isn't a market that is likely to create a meaningful top-line dynamic in the second half of this year.
Douglas Berthiaume - Chairman, President & CEO
What could be much more significant is the UPC2 that kind of we got a little bit of momentum from late in last year, but really is building momentum as we go through this year. So I think the UPC2 could be a much more significant dynamic than the APC.
Tycho Peterson - Analyst
And on UNIFI, can you talk about how we should be thinking about tracking the success of that business? Are you able to give us a rough sense of how many customers you have today? And I think in your comments, you talked about kind of pulling through instrument sales with that as well.
Douglas Berthiaume - Chairman, President & CEO
I think you see most of the dynamic at this point on UNIFI coming from tailored systems. UNIFI has not launched in terms of its overall chromatography network-based systems. But it clearly, with the launch of UNIFI into the high-end mass spec systems, this has been clearly partly what drove the enhanced position in the first quarter. We see clear evidence of that. But I think the beauty of UNIFI is that, as you go through this year and into next year, more and more of the broad-based chromatography and mass spec applications come under the UNIFI umbrella and offer significant upgrade opportunities, as well as competitive advantages in many of these applications.
Tycho Peterson - Analyst
Okay, and then last one, did you quantify the delayed pharma orders? I know you've talked about it in a number of questions here, but did you actually quantify that?
Douglas Berthiaume - Chairman, President & CEO
No, we didn't. It is multimillion dollars, but less than $10 million.
Tycho Peterson - Analyst
Perfect. Thank you very much.
Operator
Sung Ji Nam, Cantor Fitzgerald.
Sung Ji Nam - Analyst
Thanks for the questions. I was wondering if you could comment on the pricing trends, specifically for the mass spec business.
Douglas Berthiaume - Chairman, President & CEO
I'm sorry, I lost the last part of that. Could you repeat the question?
Sung Ji Nam - Analyst
Yes, pricing trends for the mass spec business.
Douglas Berthiaume - Chairman, President & CEO
I would say there is nothing noticeable in terms of changes in pricing trends in our mass spec business. You can see our margins have been the same. Certainly not major price increases, but no significant change -- yes, stable prices I think is probably the way to characterize it.
Sung Ji Nam - Analyst
Okay, great. And then lastly, was wondering if you could maybe talk about -- is there any updates to how you look at the diagnostic -- clinical diagnostic opportunity in the medium term and if there are any updates there.
Douglas Berthiaume - Chairman, President & CEO
We are still very optimistic about the diagnostic opportunities. We continue to invest both R&D and early-stage marketing. But I wouldn't say that we have anything to report on any major breaking news on the diagnostics front. But we continue to be encouraged about the long-term applications of LC-MS in the diagnostic marketplace.
Sung Ji Nam - Analyst
Great. Thank you.
Operator
Steve Willoughby, Cleveland Research.
Steve Willoughby - Analyst
Thanks for taking my question. Just regarding the improvement in mass spec you've seen, it sounds like it was with some European government customers. I guess is that something that wrapped up in the first quarter or is that going to fall over to quarters over the remainder of the year? I know when we talked a couple of months ago, you were expecting instrument growth this quarter to be kind of closer to flattish versus the 8% you did, so I'm just wondering what kind of changed or came in better versus what you guys were initially expecting a few months ago?
Douglas Berthiaume - Chairman, President & CEO
No, I don't know what you mean by flattish, Steve. We're anticipating that the strength in mass spec continues more or less on the trajectory that it's on. So we don't see any competitive dynamic or market dynamic that changes the current momentum in the mass spec world.
John Ornell - VP, Finance and Administration & CFO
QTof certainly was stronger in the quarter than we anticipated. We thought that mass spec in sum total was going to do well, largely driven more by the triple quadrupoles than the high end. The high-end did do better, but as a group of products, we thought that mass spec would do well, and it actually did a little better than that to start the year.
Operator
Does that answer your question, Mr. Willoughby?
Steve Willoughby - Analyst
Yes, it is. Thanks.
Douglas Berthiaume - Chairman, President & CEO
Operator, I think that will probably be an appropriate point to end the conference call. We've now been over an hour, so I think we will just thank you all for participating, and we look forward to updating you on our next call.
Operator
This does conclude today's conference call. You may disconnect your phones at this time.