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Operator
Good day, ladies and gentlemen, and welcome to the Clovis Oncology Q4 and Full Year 2012 Financial Results Conference Call. My name is Sean and I will be your operator for today. At this time all participants are in listen-only mode. We will conduct a question-and-answer session toward the end of the conference.
(Operator Instructions)
As a reminder, this call is being recorded for replay purposes. I would like to turn the call over to Anna Sussman, Senior Director of Investor Relations. Please proceed.
Anna Sussman - Senior Director - IR
Thank you, Sean. Good afternoon, everyone, and welcome to the Clovis Oncology fourth quarter and yearend 2012 conference call.
You should have received the news release announcing our results. If not, it's available at www.clovisoncology.com. As a reminder this call is being recorded and webcast. And remarks may be accessed live at our website during the call and will be available in our archives for the next several weeks.
The agenda for today's call is as follows. Patrick Mahaffy, our President and CEO, will discuss the highlights of 2012 and our strategic objectives for 2013. Then Erle Mast, our Chief Financial Officer, will cover the financial results for the quarter and year in greater detail and comment on the Company's outlook for 2013. Pat will make a few closing remarks and then we'll open the call for Q&A.
Before we begin, please note that during today's call we may make forward-looking statements within the meaning of the federal securities laws, including statements concerning our financial outlook and expected business plan. All of these statements are subject to risks and uncertainties that could cause actual results to differ materially from those described in the forward looking statements.
Please refer to our recent filings with the SEC for a full review of the risks and uncertainties associated with our business. Forward-looking statements speak only as of the date on which they're made and undertakes no obligation to update or revise any forward-looking statements.
Now I'll turn the call over to Patrick Mahaffy.
Patrick Mahaffy - President, CEO
Thanks, Anna. Welcome, everybody. Thank you for joining us this afternoon. We made very important progress during 2012 despite the disappointing outcome of the LEAP study for CO-101 in pancreatic cancer. And this afternoon I'd like to take the opportunity to highlight our clinical development programs called CO-1686 in Rucaparib in the context of 2012 accomplishments and anticipated 2013 milestones.
First to CO-1686, which is our oral small molecule covalent inhibitor of the mutant forms of epidermal growth factor receptor, or EGFR, for the treatment of non-small cell lung cancer, 1686 targets both the initial activating EGFR mutations, as well as the primary resistant mutation, T790M. And it has the potential to treat non-small cell lung cancer patients with EGFR mutations both as a first line and a second line treatment. Because 1686 [fares wild] type, or normal EGFR, it has the potential to cause a lower incidence of toxicity, particularly the skin rash and diarrhea normally associated with other EGFR inhibitors.
In March 2012 we initiated our first human clinical study in 1686. We initiated the Phase I/II study at a dose of mgs per day given once daily. And we recently initiated a dosing cohort at a dose of 900 milligrams two times daily.
Based on animal models and PK data, we believe that the cohorts to commence dosing in late 2012 are now approaching the therapeutic window for 1686 to begin to show clinical benefits. In particular we were trough plasma levels above a therapeutic threshold for a reasonable period of time, especially when the drug is given twice daily.
While we have not yet achieved a partial response as defined by rhesus criteria, which requires a 30% [transiture] or greater tumor reduction, we are seeing tumor shrinkage for 1686 in (inaudible) patients as we get to higher doses. As the study has evolved, we have seen progressively better patient outcome, as one would expect with dose escalation.
Initially patients stated that they felt better, and as doses got higher we then began to see signs of symptomatic relief such as reduced cough and fatigue. We are now seeing signs of clinical benefits, including reductions in pleural effusion and objective evidence in tumor reduction. Hopefully this progress will continue as we continue to dose escalate.
We are seeing some reversible Grade 1 and 2 toxicities, so we have not yet seen rash or diarrhea in the cohorts completed to date as is common with TKI treatment. In fact at this point there is no single toxicity that we are seeing that will begin to emerge as a dose-limiting toxicity, and therefore we cannot yet predict what a dose-limiting toxicity may be. We look forward to sharing preliminary Phase I data from the study at ASCO in early June.
Once we have established the optimal dose for 1686 we intend to initiate an expansion cohort of approximately 40 non-small cell lung cancers who have progressed while on treatment with EGFR-directed therapy such as Tarceva or Iressa, and have developed the T790M resistance mutation. We also intend to study 1686 in an expansion cohort of newly diagnosed patients who express the activating mutations of EGFR.
And by inhibiting both the activating mutations of EGFR as well as its primary resistance mechanism, we are able to demonstrate a meaningful progression-free survival benefit compared to what has been seen to date for Tarceva and other TKO therapies, we would be in a position to move 1686 into a frontline development program. Pending data from the second line T790M positive cohort, our goal is to commence a registration study in the first half of 2014 in this T790M positive TKI failure population.
As we previously discussed, we are developing an improved formulation of 1686. Today we are using a free-based capsule, which is simply active ingredient in a capsule form. The commercial formulation which we expect to use in the registration study is a hydrobromide salt tablet.
In animal models this formulation has demonstrated exposure levels between three and 10 times higher than the free-based formulation. So we anticipate that the ultimate human dose will also be lower than that which we are currently exploring with the free-based formulation.
We intend to transition this formulation in the patients during the third quarter of this year. Once this new formulation is available and we have determined an appropriate dose, we also plan to initiate a Phase I study in Japan.
Finally as to 1686, in late January we entered into an exclusive sub-license to certain patent applications owned by the Dana-Farber Cancer Institute in specific inhibitors of the EGFR gatekeeper mutation, or T790M with by the already strong position of our CO-1686 patent estate. These patent applications are also known as the gatekeeper patent applications.
Turning now to Rucaparib, Rucaparib is our orally available small molecule inhibitor Part 1 and Part 2 which we are exploring as both a monotherapy and in combination with chemotherapy in patients who are predisposed to [parp] inhibitor sensitivity. We've been pleased with the progress in both our ongoing sponsored monotherapy and combination chemotherapy Phase I/II studies, as well as our investigator-sponsored monotherapy in combination chemotherapy trials.
Our Phase I/II monotherapy study continues to advance and we anticipate identifying the optimal dose within the next several cohorts. To remind you, we are currently dosing at 300 milligrams twice daily.
We have encouraging evidence of activity, including some firm PRs in the BRCA mutant patient population. Once we have achieved the dose we will then expand into the Phase II portion of the study to assess the efficacy of Rucaparib in patients with ovarian cancer associated with [dur lining] patients in the BRCA genes.
We expect to provide an update from the Phase I portion of this Phase I/II monotherapy study at ASCO in June. And in the second half of 2013 we plan to initiate two additional studies for Rucaparib. The first is a biomarker validation study and then we would relapse platinum-sensitive high-grade serous ovarian cancer to inform the definition of homologous recombination defects, or HRD, for the pivotal study. And the second is a global registration study in platinum-sensitive ovarian cancer patients with efficacy analyses pre-specified in populations defined by deficiencies in BRCA and in other DNA repair genes.
Last August we announced an agreement with Foundation Medicine to identify the additional genetic mutations beyond those in germ-line BRCA that are associated with defective DNA repair, and may be useful in identifying those additional patients who could benefit from Rucaparib.
High-grade serous ovarian cancer, for example, this has the potential to increase the percentage of ovarian cancer patients potentially eligible for Rucaparib therapy from the 15% typically found to have germ-line mutations of BRCA to an estimated 40% t0 50% of patients who have DNA repair deficiencies caused by mutations in BRCA, as well as number of other genes. Also during 2012 we learned that the European Commission granted Rucaparib orphan medicinal product designation for the treatment of ovarian cancer.
In mid 2012 we announced an agreement with Array BioPharma to discover a novel KIT inhibitor targeting resistant mutations for the treatment of gastrointestinal stromal tumors, also known as GST. This program is complementary to our current programs in development and dovetails nicely with our pipeline. We anticipate having a candidate compound by the end of 2013 or early 2014 from this collaboration.
Now I would like to turn the call over to Erle to discuss fourth quarter 2012 financial results and guidance for the year.
Erle Mast - CFO
Thanks, Pat, and afternoon, everyone. Our full financial results are included in this afternoon's press release, so I'll direct my comments to highlights for the fourth quarter and the full year 2012, as well as provide some additional analysis and commentary.
We reported a net loss of $21.1 million or $0.81 per share for the fourth quarter of 2012, and $74 million or $2.97 per share for the full year 2012. Research and development expenses totaled $18.3 million for the fourth quarter and $58.9 million for the full year of 2012.
Both our net loss and research and development expenses for the fourth quarter increased by $2.8 million as compared to the third quarter of 2012. These increases are due primarily to increased costs we incurred in the fourth quarter for the wind down of the CO-101 program.
General and administrative expenses totaled $2.8 million for the fourth quarter and $10.6 million for the full year. These amounts increased significantly from the comparable period, prior year periods as we expanded our administrative function to support becoming a public company in late 2011, as well as our growing development activities for each of our programs.
Finally, operating expenses for the fourth quarter and for the full year of 2012 included $1.3 million and $4.9 million of stock compensation expense respectively.
Our cash for 2012 totaled $66 million and that included $4.3 million for development milestones associated with our product licensing agreements. We ended 2012 with cash totaling $144.1 million with no outstanding debt and 26.2 million shares of common stock outstanding.
Now I'd like to reiterate our financial guidance for 2013. As we previously stated, we expect cash burn of $53 million to $57 million for 2013, ending the year with approximately $90 million in cash. Now I'll turn the call back to Pat for some closing remarks and then we'll open it up for Q&A.
Patrick Mahaffy - President, CEO
Thanks, Erle. Now as to our anticipated milestones for 2013, for 1686 we plan on completing the dose escalation portion of the ongoing Phase I/II trial to establish the optimal dosing schedule, plan to initiate the Phase II expansion cohorts to assess efficacy in second line T790M positive non-small cell lung cancer patients, and in first line EGFR positive non-small cell lung cancer patients. We intend to complete development of a new tablet formulation of 1686 and overall advance the clinical development program in order to initiate a registration study in second line T790M positive patients during the first half of 2014.
Now as to Rucaparib, we also plan to complete the dose escalation portion of the ongoing Phase I/II studies to establish the monotherapy dosing schedule; to initiate the Phase II expansion cohort to assess efficacy in selected ovarian cancer patients; to advance the development of a companion diagnostic to identify the patients most likely to benefit to Rucaparib from [Buacaparib]; and to initiate the biomarker validation study and a pivotal study in platinum-sensitive ovarian cancer patients in the second half of 2013. Finally, for our mutant cKIT inhibitor program we hope to identify a product candidate by the end of this year or during the first part of 2014.
In summary, we've got a strong foundation in place. We are well financed and we look forward to completing our 2013 milestones and moving our development programs forward.
With that, thank you for joining today and we'll now open the call to any Q&A.
Operator
(Operator Instructions). And your first question comes from the line of Ravi Mehrotra of Credit Suisse. Please proceed.
Ravi Mehrotra - Analyst
And good afternoon. Thanks for taking my question. And could you just give us a little bit more granularity on the transition to the new formulation of 1686, and specifically are you just going to use the same dose that you find in the Phase I/II, but in the new formulation? Can you step it up in any way, shape or form, and also on 1686 can you just what Grade 1 and 2 top [60] you did see specifically so far? Thank you.
Patrick Mahaffy - President, CEO
Sure. As for the transition, we have three formulations of this hydrobromide salt that we're evaluating in a number of animal models. We will choose one of those in the sort of May/June time frame, manufacture it and transition it into the second line study initially in the expansion cohort for T790M positive Tarceva failures around about August.
We will determine a dose based on relative exposure. So we'll determine the exposure quickly in a small number of patients and see how that compares to the current formulation, the free base. And we will then select a dose at that exposure that is equivalent and possibly continue to dose escalate, depending on what we see with that formulation.
One of the unusual features of this program is we don't know, and we may obviously run into a DLT. And that will define a MTD and that will define the dose of the program. It's possible that we will begin an expansion cohort before we get to that dose, continue to dose escalate. And that could continue only with the free base or it could continue with the hydrobromide salt as well. In any event, the bridging will begin in August and we don't regard that as highly complex or complicated given the nature of the program.
As to the toxicity, they are not (inaudible) yet. There are some joint pain that sometimes occurs in patients and then a series of kind of one-offs that may or may not be drug related. As you know, determining the full responsibility for side effects in what is a very, very advanced patient who may be developing any number of symptoms or pain related to or unrelated to the drug is a little bit difficult.
What we are seeing is any specific signal or emergent toxicity that feels like, yes, we're seeing this so consistently and with greater amounts at greater levels that we feel like that's going to be our DLT. They appear to be a relatively hazard population side effects.
Ravi Mehrotra - Analyst
Okay. If I can squeeze a quick follow on, are there any preclinical models that they can test the ration GI issues in -- and if so have you done that with 1686 and what have you seen?
Patrick Mahaffy - President, CEO
There are. We have and they've been published in posters that have been presented at both AACR and at the triple meeting. So we have done that work. And in addition to that, which is a specific test of wild type inefficient in these animal models, I'll remind that in our efficacy studies where we treated the drugs and treated with drug and demonstrated the mouse models in a variety of tumor models, the tumor regression and the very active drug the mice actually gained weight.
So a proxy for an unhappy mouse is weight loss and it's quite common in any oncology development program to see mice lose weight during the course of treatment. It was true in our control arms, which were Afatinib and Tarceva. It does not occur when treated with 1686. So the mice don't also show any proxy for rash or diarrhea. They continue to thrive.
Ravi Mehrotra - Analyst
Right. Thank you very much for taking my questions.
Patrick Mahaffy - President, CEO
You bet.
Operator
Thank you. The next question comes from the line of Marco Kozul of Leerink Swann. Please proceed.
Marco Kozul - Analyst
Hey, Pat. Good afternoon. Thanks for the updates. Just a quick one, can you repeat what you said you are currently observing in terms of efficacy with 1686 specifically in T790M patients?
Patrick Mahaffy - President, CEO
Yes. What we're seeing is as we would have and had I guess predicted that as we're getting to trough levels where we stay above a given trough concentration in the plasma, we are seeing patients move from not just having stable disease and symptomatic relief, but we are beginning to see evidence of clinical benefit that includes tumor regression that is occurring but not yet to the amount required to be defined as a PR, so that threshold. So you know there's 30%. So we haven't seen 30% tumor regression yet, but we've seen encouraging tumor regression.
And we also see things like pleural effusions going away. So our view is that as we're getting to higher doses we've seen what is almost a dose response in reaction to these higher levels as patients have gone from stable disease and symptomatic relief to something that continues with that, but also has additional clinical benefit.
Marco Kozul - Analyst
All right, terrific. And can you remind us what the baseline expectation should be for T790M in patients in terms of response of survival in the setting?
Patrick Mahaffy - President, CEO
Well no one ever with any drug has shown tumor regression with monotherapy in a T790M positive patient. So we don't have a whole lot of baseline to compare it to. And one of the reasons for the great amount of interest and enthusiasm on the part of investigators for this program is that the animal data at least predict that maybe for the first time we'll be able to show that in human studies.
Marco Kozul - Analyst
All right, really helpful, and then just one more and then I'll jump back in queue. There's a lot of interest for 1686 amongst KOLs we speak with, and also the area in 113 drug. Can you briefly compare and contrast these for us, possibly with the focus on differentiation and also where the development programs may be taking them?
Patrick Mahaffy - President, CEO
Well our drug is not an ALK inhibitor and I think 113 is a very good ALK inhibitor. And we don't have a lot more to say. The reality is is there are chemical differences. Ours is a covalent inhibitor. Theirs is not. Theirs was designed specifically to be an inhibitor of mutants of ALK and may have certain other attributes because as you probably are aware it inhibits a number of kinases at 100 [nanamore] or lower.
And so it is a drug that is active against a large number of kinases. Our drug is not. Our drug is designed specifically to affect the mutant forms of EGFR, including T790M and the activating mutations, and not data wild side. It does not. Whether that translates in the same way into humans as it has in animals in other studies time will tell, but we're pleased with what we've seen so far. And the enthusiasm of our investigators increases and I think they're very excited about what they're seeing with the drug.
Marco Kozul - Analyst
Great. I'll jump back in queue. Thanks for taking the questions.
Operator
Thank you. You have no questions at this time. (Operator Instructions). Okay. And the next question comes from Marco Kozul of Leerink Swann.
Marco Kozul - Analyst
All right, terrific. I'm back. So I have a question about your companion diagnostics for 1686. While it appears that currently you're focused on and using biopsies for prognostic value, how would you incorporate potentially serum samples into the companion diagnostic development program? And how important might this be for treatment on these patients? Thanks.
Patrick Mahaffy - President, CEO
If anything it is a really important question, and what we have done is some exploratory work looking at not circulating tumor cells, but a pre DNA in plasma. And we've been pleased with what we've seen so far.
And we know of many companies with different, not many but several companies with different technological approaches that are absolutely trying to develop a blood-based assay for circulating DNA that would be from the tumor. And so we watch with great interest the effort.
It may well be that we will participate to some extent in the development of a blood-based diagnostic. And one of the great things that we can bring to the party is of course blood from T790M positive patients being tested in the clinical study. So an asset that we have, or will have over the course of this development program, will in fact be those plasma samples or blood samples from T790M positive patients. And so we will evaluate the best means to push forward.
In the short term, and probably for our full initial clinical development program, we are focused on a tissue-based assay with Roche Molecular. It's a PCR-based assay that is effectively the same one that they filed for approval for the activating stations to run on their Cobalt system and for their Tarceva supplemental NDA.
And we made a decision that at this moment in time there's enough risk in clinical development, including the diagnostic development that the default to the tissue-based assay is the smart path forward from a clinical development standpoint, but we absolutely anticipate that over the course of the development of the compound, and certainly assuming success post commercial that these blood-based assays for T790M or the activating mutations of EGFR will be an incredibly important means for positions in patients to diagnose their patients' EGFR status without requiring a second biopsy. So we love it that this work is going on and we will participate in one form or another, but right now our PNA directed activity is going to be the default to the simpler path, which is the tissue-based assay.
Marco Kozul - Analyst
Thanks, and maybe continuing this theme, but a question on PARPs. With the growing interest and competition amongst PARPs, if a competing PARP were to achieve approval prior to Rucaparib, can you walk us through the benefit that your development program has safe, and for monotherapy and companion diagnostic might provide to Rucaparib's commercial potential, even if it was approved after? Thanks.
Patrick Mahaffy - President, CEO
Yes. In the end in this industry what triumphs most of all is better efficacy. And I'm not predicting better efficacy, but I'm saying that to the extent somebody got approved in a sort of all comers population which didn't have a TMA diagnostic directive selection for those most likely to benefit from the PARP inhibitor, I think that that company in this case I think it will be us because we're committed to it, who develop the drug in a targeted population that is identified with the PMA-directed diagnostic, in our case like we have a foundation, has the potential to yield better outcomes in that select population. And of course from a reimbursement and utilization standpoint, better outcomes tend to lead to better utilization.
And you're well aware of this. We live in an era where the idea of kind of a quick label and then off-label use is becoming a thing of the past. In the end our trial design is going to inform for our label. Our label is going to inform one-on-one to one basis for how our drug is used and how it is reimbursed. And that's true for anybody developing a drug in this space.
So without commenting on competitor development plans, some of which haven't been described fully, we are committed to the use of these -- of this companion diagnostic to identify at a minimum patients with the mutant forms of BRCA and some added mutations of BRCA as a first instance where one would predict based on all the available data one would see the best outcome for the PARP inhibitor, but also looking in this same trial at this BRCA in this population, that population who have other genes associated with DNA repair deficiency, who should also benefit in a very meaningful way from a PARP inhibitor.
And I think our label would be limited to those two populations given the design of our trial. And if we do see superior outcomes as compared to a sort of all comers population, then I think we have a very good chance if we're not first of at least being a meaningful competitive player.
Marco Kozul - Analyst
Terrific, Pat. I'm sorry, just one more on intellectual property. Can you talk a little bit about the life of the recent IP that you're referring to, the updates that you provided? And is this IP at all blocking to others in the space? Thanks.
Patrick Mahaffy - President, CEO
We -- we have potential IP on the composition of matter that will go through 2033. And that is derived primarily from the Avila patent estate that we licensed this from, but you may be aware that this company was formed called Gatekeeper that first published in Nature in December of 2009, a publication that demonstrated in animal models that their compounds were specific for T790M, did not hit wild type and showed meaningful tumor regressions. And they got people excited about this space. They got us excited about this space.
We did meet with them, all those from an IP perspective, at least from our sense led to Avila's having a dominant IP, but it certainly didn't say that Avila was going to have the only IP. And given what's happened with Gatekeeper, and I won't go through the details of it, but they remain I believe in litigation with Novartis about some things that happened now three plus years ago.
I think they felt it was in their best interest, and we felt it was in ours for us to add to our portfolio these additional patent applications from the Dana-Farber's and some of which they had filed independently themselves, which gives us, I believe will give us pending the claims of issue, it's not only a very strong estate that protects 1686 for that life I've described to 2033, but certainly would be a challenge for a competitor developing a mutant-specific wild type sparing covalent inhibitor of EGFR in terms of avoiding claims that we hope, and believe and we'll issue from this now large patented space that we own.
Marco Kozul - Analyst
All right, terrific. Thanks for taking the questions, look forward to the future updates. Thanks.
Patrick Mahaffy - President, CEO
You bet. Thanks, Marco.
Operator
Thank you. We have no further questions. I would now like to turn the call over to Anna Sussman for closing remarks.
Anna Sussman - Senior Director - IR
Thank you, thank all of you for your interest in Clovis today. If you have any follow-up questions, please call me at 303-625-5032. This call can be accessed via a replay of our webcast at our website beginning in about an hour and will be available for 30 days. Again, we appreciate your interest and time and have a good evening.
Operator
Thank you for joining today's conference. This (inaudible). You may now disconnect. Good day.